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Kruskal Wallis test Python

The Kruskal-Wallis H-test tests the null hypothesis that the population median of all of the groups are equal. It is a non-parametric version of ANOVA. The test works on 2 or more independent samples, which may have different sizes. Note that rejecting the null hypothesis does not indicate which of the groups differs. Post hoc comparisons between groups are required to determine which groups are different I think that the reason why the Kruskal Wallis test was giving the same p-value in all cases is because you are only comparing only two values in each case. To pass a list of arrays to the kruskal test, it seems that you need to pass it as mstats.kruskalwallis(*args). See (create vectors for Kruskal-Wallis H-test python Compute the Kruskal-Wallis H-test for independent samples. Parameters sample1, sample2, array_like. Two or more arrays with the sample measurements can be given as arguments. Returns statistic float. The Kruskal-Wallis H statistic, corrected for ties. pvalue float. The p-value for the test using the assumption that H has a chi square distribution. Notes. For more details on kruskal, see. Kruskal Wallis Test: It is a nonparametric test. It is sometimes referred to as One-Way ANOVA on ranks. It is a nonparametric alternative to One-Way ANOVA. It is an extension of the Man-Whitney Test to situations where more than two levels/populations are involved. This test falls under the family of Rank Sum tests. It depends on the ranks of the sample observations

hypothesis-testing python wilcoxon-mann-whitney-test kruskal-wallis-test scipy. Share. Cite. Improve this question. Follow edited Jun 24 '18 at 2:51. Michael R. Chernick . 38.3k 28 28 gold badges 68 68 silver badges 139 139 bronze badges. asked Jun 23 '18 at 20:11. Phlippie Bosman Phlippie Bosman. 121 2 2 bronze badges $\endgroup$ 1. 1 $\begingroup$ The Mann-Whitney test is inappropriate as a. The Kruskal-Wallis H-test can be implemented in Python using the kruskal() SciPy function. It takes two or more data samples as arguments and returns the test statistic and p-value as the result. The complete example is listed below The following are 18 code examples for showing how to use scipy.stats.kruskal().These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example In Python, it is very easy with Scipy library. import scipy.stats as stats t, pvalue = stats.kstest(sample, 'norm') Let's say your alpha level is 0.05. If the p-value is larger than 0.05, that means that you cannot reject the null. You can say that the sample is from Normal Distribution with a confidence level of 95%. Test for Equality of Variance. If your sample is large enough, it is.

The Kruskal-Wallis test is a nonparametric version of the one-way analysis of variance test or ANOVA for short. It is named for the developers of the method, William Kruskal and Wilson Wallis. This test can be used to determine whether more than two independent samples have a different distribution. It can be thought of as the generalization of the Mann-Whitney U test. The default assumption. Gealach: 这个就是Friedman test. 非参数统计的Python实现—— Mann-Whitney 秩和检验. print_cheng: 这个statistic是什么意思呢. 非参数统计的Python实现—— Friedman 秩方差分析. ccxback: 您好这个可以用来做Friedman test嘛. 非参数统计的Python实现—— Cox-Staut 趋势存在性检 当样本数据非正态分布,两组数对比时用mann-whitney检验,三组或更多时用kruskal-wallis检验 . kruskal-wallis 是一个独立单因素方差检验的版本. kruskal-wallis能用于排序计算 . 样本数据 . 流程. H0和H1假设 . 自由度:组数-1,这里有三组,自由度为3-=

scipy.stats.kruskal — SciPy v1.6.1 Reference Guid

  1. Der Kruskal-Wallis-Test (nach William Kruskal und Wilson Allen Wallis; auch H-Test) ist ein parameterfreier statistischer Test, mit dem im Rahmen einer Varianzanalyse getestet wird, ob unabhängige Stichproben (Gruppen oder Messreihen) hinsichtlich einer ordinalskalierten Variable einer gemeinsamen Population entstammen. Er ähnelt einem Mann-Whitney-U-Test und basiert wie dieser auf.
  2. Quick-reference guide to the 17 statistical hypothesis tests that you need in applied machine learning, with sample code in Python. Although there are hundreds of statistical hypothesis tests that you could use, there is only a small subset that you may need to use in a machine learning project. In this post, you will discover a cheat sheet for the most popular statistica
  3. A Mann-Whitney U test (sometimes called the Wilcoxon rank-sum test) is used to compare the differences between two samples when the sample distributions are not normally distributed and the sample sizes are small (n <30). It is considered to be the nonparametric equivalent to the two sample t-test.. This tutorial explains how to conduct a Mann-Whitney U test in Python
  4. Ein Kruskal-Wallis-Test wird verwendet, um festzustellen, ob es einen statistisch signifikanten Unterschied zwischen den Medianwerten von drei oder mehr unabhängigen Gruppen gibt oder nicht. Dieser Test ist das nichtparametrische Äquivalent der einfaktoriellen ANOVA und wird normalerweise verwendet, wenn die Annahme einer Normalverteilung verletzt wird
  5. The Kruskal-Wallis Test effect size can be calculated based on the formulae from the article, once the Kruskal-Wallis H-test has been computed, the epsilon-squared estimate of effect size can be python effect-size kruskal-wallis-test

The Kruskal-Wallis test is the non-parametric analogue of one-way analysis of variance. The non-parametric tests are used in situations when the assumptions of parametric tests are not met. If we find significant difference in Kruskal-Wallis then post hoc tests are done to find where the difference exists. For this purpose, we can perform dunn test. The function of dunn test can be accessed. The Kruskal-Wallis test is a non-parametric test used for testing whether samples originate from the same distribution. The parametric equivalent of the Kruskal-Wallis test is the one-way analysis of variance (ANOVA). When rejecting the null hypothesis of the Kruskal-Wallis test, then at least one sample stochastically dominates at least one other sample. The test does not identify where this.

Ein Kruskal-Wallis-Test wird verwendet, um festzustellen, ob es einen statistisch signifikanten Unterschied zwischen den Medianwerten von drei oder mehr unabhängigen Gruppen gibt oder nicht. Es wird als nicht parametrisches Äquivalent der einfaktorielle ANOVA angesehen . In diesem Tutorial wird erklärt, wie ein Kruskal-Wallis-Test in SPSS. Kruskal-Wallis rank sum test 1.106959e-69 rating rating 1.209027e-46 301.727638 Kruskal-Wallis rank sum test 1.027673e-45 budget budget 3.899860e-44 288.974760 Kruskal-Wallis rank sum test 2.209921e-43 r8 r8 9.900004e-39 261.288151 Kruskal-Wallis rank sum test 4.207502e-38 mpaa mpaa 3.732200e-35 242.779393 Kruskal-Wallis rank sum test 1.268948e-3

Kruskal Wallis test is a non-parametric test. It was used when you have data not fellow the normal distribution. Choosing the type of test not up to you. There are some instructions to perform the. SPSS Kruskal-Wallis Test - Simple Tutorial with Example By Ruben Geert van den Berg under Nonparametric Tests & Statistics A-Z. The Kruskal-Wallis test is an alternative for a one-way ANOVA if the assumptions of the latter are violated. We'll show in a minute why that's the case with creatine.sav, the data we'll use in this tutorial.But let's first take a quick look at what's in the data anyway The Kruskal-Wallis test extends the Mann-Whitney-Wilcoxon Rank Sum test for more than two groups. The test is nonparametric similar to the Mann-Whitney test and as such does not assume the data are normally distributed and can, therefore, be used when the assumption of normality is violated. This example will employ the Kruskal-Wallis test on the PlantGrowth dataset as used in previous examples The test is non-significant, W= 0.9167, p= 0.1715, which indicates that the residuals are normally distributed. Another way to test the assumption is through a visual check- this is helpful when the sample is large. The reason this is true is that as the sample size increases, the statistical test's ability to reject the null hypothesis increases, i.e. it gains power to detect smaller.

Kruskal-Wallis test by rank is a non-parametric alternative to one-way ANOVA test, which extends the two-samples Wilcoxon test in the situation where there are more than two groups. It's recommended when the assumptions of one-way ANOVA test are not met. This tutorial describes how to compute Kruskal-Wallis test in R software The Kruskal-Wallis test is a rank-based test that is similar to the Mann-Whitney U test but can be applied to one-way data with more than two groups. It is a non-parametric alternative to the one-way ANOVA test, which extends the two-samples Wilcoxon test. A group of data samples is independent if they come from unrelated populations and the samples do not affect each other

The Kruskal Wallis test, an extension of the Mann-Whitney U test for comparing two groups, Let's examine how to call up these tests in Python 3. First, the parametric data: The stats module is a great resource for statistical tests. Paired t test is. scipy.stats.ttest_rel. Unpaired t test is . scipy.stats.ttest_ind. For ttest_rel and ttest_ind, the P-value in the output measures an. (Kruskal-Wallis test) $ python mann-whitney-u-test.py GroupA GroupB GroupC GroupD GroupA - *0.0192043876643 0.11541267853 *0.0290956779717 GroupB - - *0.001695333779 0.437412800807 GroupC - - - *0.00206574468142 GroupD - - - - 以上です。 最後までお読みいただきありがとうございます。. Kruskal Wallis test Python. The Kruskal-Wallis H-test tests the null hypothesis that the population median of all of the groups are equal. It is a non-parametric version of ANOVA. The test works on 2 or more independent samples, which may have different sizes. Note that rejecting the null hypothesis does not indicate which of the groups differs Compute the Kruskal-Wallis H-test for independent.

arrays - Input format for Kruskal-Wallis test in Python

  1. Kruskal-Wallis test is implemented in SciPy package. Now we can run Kruskal-Wallis analysis of variance. >>> H, p = ss. kruskal (* data) >>> p 1.5692820940316782e-14. P value tells us we may reject the null hypothesis that the population medians of all of the groups are equal. To learn what groups (species) differ in their medians we need to run post hoc tests. scikit-posthocs provides a.
  2. python tools\output\generateTLSE1Detectors.py -n .net.net.xml -o detectors.add.xml The t test and the Kruskal-Wallis test are available in this script. If not specified, the Kruskal-Wallis test will be applied with the assumption that data are not normally distributed. In order to execute this script, the other two scripts, i.e. statisticsElements.py and tables.py, are required. They all.
  3. scikit-posthocs is a Python package that provides post hoc tests for pairwise multiple comparisons that are usually performed in statistical data analysis to assess the differences between group levels if a statistically significant result of ANOVA test has been obtained.. scikit-posthocs is tightly integrated with Pandas DataFrames and NumPy arrays to ensure fast computations and convenient.
  4. Kruskal-Wallis test; Smart layout of multiple annotations with correct y offsets. Annotations can be located inside or outside the plot. Format of the statistical test annotation can be customized: star annotation, simplified p-value, or explicit p-value. Optionally, custom p-values can be given as input. In this case, no statistical test is performed. Installation. The latest stable release.
  5. How to Calculate Nonparametric Statistical Hypothesis Tests in Python, The Kruskal-Wallis H and Friedman tests for comparing more than two data samples: the nonparametric version of the ANOVA and repeated I have a dataframe of 27 columns (26 are numeric variables and the 27th column tells me which group each row is associated with). There are 7 groups in total I'm trying to apply the Kruskal.
  6. The Kruskal-Wallis ANOVA is a nonparametric method for testing the equality of different samples' medians. The Kruskal-Wallis test is an extension of Mann-Whitney U test to three or more populations. This test requires that the populations are identically distributed. The null hypothesis is that all of the population medians are equal. The alternative hypothesis is that at least two of the.

scipy.stats.mstats.kruskalwallis — SciPy v1.6.1 Reference ..

The Kruskal-Wallis test is actually testing the null hypothesis that the populations from which the group samples are selected are equal in the sense that none of the group populations is dominant over any of the others. A group is dominant over the others if when one element is drawn at random from each of the group populations, it is more likely that the largest element is in that group. H 0. Complete the following steps to interpret a Kruskal-Wallis test. Key output includes the point estimates and the p-value. To determine whether any of the differences between the medians are statistically significant, compare the p-value to your significance level to assess the null hypothesis. The null hypothesis states that the population medians are all equal. Usually, a significance level. You will get a Kruskal-Wallis test and will also get post hoc tests automatically if the omnibus test is significant if your grouping variable has more than two levels. Note that the full test results for the K-W test and the post-hoc tests are contained in the Model Viewer in the output, if you have your settings to show Model Viewer output. You need to double-click on this object in the.

Kruskal-Wallis test_weixin_33873846的博客-CSDN博客

Kruskal Wallis Test - GeeksforGeek

The Kruskal-Wallis test extends the Mann-Whitney-Wilcoxon Rank Sum test for more than two groups. The test is nonparametric similar to the Mann-Whitney test and as such does not assume the data are normally distributed and can, therefore, be used when the assumption of normality is violated. This example will employ the Kruskal-Wallis test on the PlantGrowth dataset as used in previous. pairwise comparison for kruskal-wallis test. tukeyhsd ([alpha]) Tukey's range test to compare means of all pairs of groups. Methods. allpairtest (testfunc[, alpha, method, pvalidx]) run a pairwise test on all pairs with multiple test correction. getranks convert data to rankdata and attach. kruskal ([pairs, multimethod]) pairwise comparison for kruskal-wallis test. tukeyhsd ([alpha]) Tukey.

Video: python - Understanding hypothesis testing (Kruskal Wallis

How to Calculate Nonparametric Statistical Hypothesis

Kruskal-Wallis H Test using SPSS Statistics Introduction. The Kruskal-Wallis H test (sometimes also called the one-way ANOVA on ranks) is a rank-based nonparametric test that can be used to determine if there are statistically significant differences between two or more groups of an independent variable on a continuous or ordinal dependent variable The Kruskal-Wallis test is a nonparametric (distribution free) test, and is used when the assumptions of one-way ANOVA are not met. Both the Kruskal-Wallis test and one-way ANOVA assess for significant differences on a continuous dependent variable by a categorical independent variable (with two or more groups). In the ANOVA, we assume that the dependent variable is normally distributed and. Since we expect runtime data to be right skewed (because it's positive data), we do the one-way non-parametric Kruskal-Wallis test. This test doesn't assume a specific distribution of the data. This test uses the chi-square-distribution for the test statistics. The null hypothesis is: All samples have the same mean The alternative hypothesis is: At least one value dominates the others. A Kruskal-Wallis test is not appropriate if you have repeated measurements taken on the same experimental unit (subject). For example, if you have a pre-test, post-test, and follow-up study then each subject would be measured at three different time points. If this is the case, then a single factor repeated measures ANOVA or nonparametric Friedman test may be a more appropriate course of.

Python Examples of scipy

Ich habe bei meinen Daten einen Kruskal Wallis Test durchgeführt (die abhängige Variable ist ordinalskaliert, die Gruppierungsvariable hat >2 Gruppen und deswegen kann ich den Mann-Whitney-U Test nicht anwenden). Da meine Ergebnisse signifikant sind, möchte ich ein Post-Hoc Test machen um ein paarweise Vergleich haben zu können beziehungsweise rausfinden zu können zwischen welchen Gruppen. Check out the Python version and the Twitter summary. Share on Twitter This document is summarised in the table below. It shows the linear models underlying common parametric and non-parametric tests. Formulating all the tests in the same language highlights the many similarities between them. Get it as an image or as a PDF. 1 The simplicity underlying common tests. Most of the common.

Non-Parametric Tests in Hypothesis Testing by Bonnie Jie

generally more powerful than Kruskal-Wallis test (higher probability that the test will reject the H. 0. when the H. A. is true). Title: Jonckheere-Terpstra test Author: Tao Xu Created Date: 12/17/2013 11:30:47 AM. The Kruskal-Wallis test extends the Mann-Whitney-Wilcoxon Rank Sum test for more than two groups. The test is nonparametric similar to the Mann-Whitney test and as such does not assume the data are normally distributed and can, therefore, be used when the assumption of normality is violated. This example will employ. example of the kruskal wallis h test from numpyrandom import seed from. Example of the kruskal wallis h test from numpyrandom. School Universiti Teknologi Mara; Course Title FACULTY OF 779; Uploaded By ChancellorLlama592. Pages 291 This preview shows page 256 - 259 out of 291 pages.. Kruskal's Algorithm (Python). GitHub Gist: instantly share code, notes, and snippets. Skip to content. All gists Back to GitHub Sign in Sign up Sign in Sign up {{ message }} Instantly share code, notes, and snippets. hayderimran7 / kruskal.py Forked from msAzhar/kruskal.py. Created Feb 21, 2017. Star 13 Fork 0; Star Code Revisions 1 Stars 13. Embed. What would you like to do? Embed Embed this. Kruskal-Wallis 1-way ANOVA with Dunn's multiple comparison test: Arguments:-----groups: sequence: arrays corresponding to k mutually independent samples from: continuous populations: to_compare: sequence: tuples specifying the indices of pairs of groups to compare, e.g. [(0, 1), (0, 2)] would compare group 0 with 1 & 2. by default, al

Since we expect runtime data to be right skewed (because it's positive data), we do the one-way non-parametric Kruskal-Wallis test. This test doesn't assume a specific distribution of the data. This test uses the chi-square-distribution for the test statistics. The null hypothesis is: All samples have the same mean The alternative hypothesis is: At least one value dominates the others. The Kruskal-Wallis test will tell us if the differences between the groups are so large that they are unlikely to have occurred by chance. Here are the data: Graham Hole Research Skills Kruskal-Wallis handout, version 1.0, page 2 Rating on depression scale: No exercise Jogging for 20 minutes Jogging for 60 minutes 23 22 59 26 27 66 51 39 38 49 29 49 58 46 56 37 48 60 29 49 56 44 65 62 mean. are described in Subchapter 14a of Concepts and Applications. In order to apply the Kruskal- Wallis test, the raw data from samples A, B, C, and D must first be combined into a set of N=n a +n b +n c +n d elements, which are then ranked from lowest to highest, including tied rank values where appropriate. After all N items have been ranked, these.

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Introduction to Nonparametric Statistical Significance

Kruskal-Wallis H Test For example: A Kruskal-Wallis H test was performed to explore the empathy scores as students progress through medical education, i.e. year 1 to year 5. Running a Kruskal-Wallis Test in SPSS We use K Independent Samples if we compare 3 or more groups of cases. They are independent because our groups don't overlap (each case. The Kruskal-Wallis test is sometimes called Kruskal-Wallis one-way anova or non-parametric one-way anova. For example, if two populations have symmetrical distributions with the same center, but one is much wider than the other, their distributions are different but the Kruskal-Wallis test will not.... My colleague is applying non parametric (Kruskal-Wallis) to check for differences between groups. There are 12 groups and test showed that there is significant difference in the groups. However, to check which pair is significant is tedious and I'm not sure if there is comparable post-hoc test in non-parametric approach. Any resources available in hands? My answer: Bonferroni correction is. COMPARING WELCH ANOVA, A KRUSKAL-WALLIS TEST, AND TRADITIONAL ANOVA IN CASE OF HETEROGENEITY OF VARIANCE By Hangcheng Liu A Thesis Submitted to the Faculty of Virginia Commonwealth University in Partial Fulfillment of the Requirements for the Master of Science Degrees in Biostatistics in the Department of Biostatistics Richmond, Virginia J. ULY . 2015 . Template Created By: James Nail 2010 ii. The Kruskal-Wallis test does not rely on these assumptions, so it can be used when these assumptions are violated all when the sample sizes are so small that not much information is available to check the assumptions at all. Apart from that it's of course also useful when the data are ordinal. The Kruskal-Wallis test is only slightly less powerful than the one-way anova. Let me summarize what.

非参数统计的Python实现—— Kruskal-Wallis 单因素方差分析_Raider_zreo的博客-CSDN博

  1. e whether there is a significant difference between the Control and the average of the New and Old groups for the data in Example 1 of Kruskal-Wallis Test. To perform this test, press Ctrl-m and double click on Analysis of Variance (or click on the Anova tab if using the Multipage interface) and select Single Factor Anova.
  2. > kruskal.test(data, group) Kruskal-Wallis rank sum test data: data and group Kruskal-Wallis chi-squared = 5.5487, df = 2, p-value = 0.06239 解説ページ 直前のページへ戻る E-mail to Shigenobu AOK
  3. ute read. Published: December 30, 2020. The Kruskal-Wallis test is a non-parametric statistical test that is used to evaluate whether the medians of two or more groups are different. Since the test is non-parametric, it doesn't assume that the data comes from a particular distribution

Kruskal - Wallis Test: The Kruskal-Wallis test is a nonparametric test for finding if three or more independent samples come from populations having the same distribution. It is a nonparametric version of ANOVA. Browse Other Glossary Entrie Kruskal-Wallis ANOVA Test Results. This test is used to evaluate the degree of association between samples. It is assumed that the samples have similar distributions and that they are independent. All cases in all samples are ranked together and then the rank sum of each sample is found. The test statistic is calculated as follows: where N is the total number of cases in all samples, M is the.

Kruskal-Wallis test - python_backup - 博客

  1. It is quite simple to perform an independent t-test in Python. from scipy.stats import ttest_ind ttest_ind(data. value[data. names == 'beef'],data. value[data. names == 'pork']) We first import the relevant function from the stats portion of the scipy library. We then run our independent t-test using the following command: ttest_ind(group1_data, group2_data). For our data, running this command.
  2. Introduction We will talk about shapiro-wilk, kruskal-wallis, Mann-whitney, wilcoxon rank test and some other tests in this and other continuing posts.These tests are crucial in establishing different assumptions about samples, tests and modelings. Let's start this series with this post describing shapiro wilk test. Shapiro wilk test: The first brick in buildings of statistics is samples and.
  3. The Kruskal-Wallis test is the non-parametric version of a one-way ANOVA. If our ANOVA (Kruskal-Wallis) says that our groups differ (in terms of some variable we're measuring) Dunn's test will look into each pair of groups and check where exactly those differences exist, while taking into consideration all other measurements in all other groups being compared within the previously computed.
  4. The Kruskal-Wallis test is a rank-based test that is similar to the Mann-Whitney U test, but can be applied to one-way data with more than two groups. Without further assumptions about the distribution of the data, the Kruskal-Wallis test does not address hypotheses about the medians of the groups. Instead, the test addresses if it is likely that an observation in one group is greater.

Kruskal-Wallis-Test - Wikipedi

  1. kruskalwallis — Kruskal-Wallis test. multcompare does not support multiple comparisons using anovan output for a model that includes random or nested effects. The calculations for a random effects model produce a warning that all effects are treated as fixed. Nested models are not accepted. Data Types: struct. Name-Value Pair Arguments. Specify optional comma-separated pairs of Name,Value.
  2. The Kruskal Wallis test in R is a non-parametric method to test whether multiple groups are identically distributed or not. The word non-parametric implies that we do not have to make any assumptions about the underlying distribution of data. To explain this test, I have chosen a built in dataset in R called chickwts. I'll illustrate the various steps involved in this test by.
  3. Der Wilcoxon-Mann-Whitney-Test (auch: Mann-Whitney-U-Test, U-Test, Wilcoxon-Rangsummentest) ist die zusammenfassende Bezeichnung für zwei nichtparametrische statistische Tests für Rangdaten (ordinalskalierte Daten).Sie testen, ob es bei Betrachtung zweier Populationen gleich wahrscheinlich ist, dass ein zufällig aus der einen Population ausgewählter Wert größer oder kleiner ist als ein.
  4. As the Kruskal-Wallis Test statistics is highly signi cant (˜2(5) = 54:69;p<0:01), the null hypothesis is rejected. Thus, it is meaningful to apply post-hoc tests with th
  5. Search for jobs related to Kruskal wallis weka or hire on the world's largest freelancing marketplace with 19m+ jobs. It's free to sign up and bid on jobs
  6. > Dear all, > > I run a kruskal wallis test and found significant results. Then, I > conducted all pairwise comparisons and found no significant results. Could > anyone please give me a hint as to why this happens or redirect me towards > a specific web page where I can find more info? (I used alpha=5% and made > no bonferroni or other correction for the pairwise comparisons) > Thank you.

17 Statistical Hypothesis Tests in Python (Cheat Sheet

How to Conduct a Mann-Whitney U Test in Python - Statolog

Kruskal wallis test example pdf an algorithm for computing the exact distribution of chi squared exercises one way analysis variance by rank A Kruskal-Wallis test showed that Location had a modest significant effect on how motivated students were by the teacher, χ 2 (2, N = 54) = 21.33, p < .001. Click here to see how you can perform a Kruskal-Wallis H test, with SPSS, R (studio), Excel, Python, or Manually. with SPS Prism performs the Dunn's multiple comparison test(1), which is standard. One source is Daniel's Applied nonparametric statistics, second edition page 240-241. Some books and programs don't use Dunn's name, but simply refer to this test as the post test following a Kruskal-Wallis test, and don't give it an exact name. Step 1. Calculate

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